TRACERx PHLEX
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Getting started

  • Quick start
  • Tutorial
  • Contact

Deep-imcyto

  • Nuclear and cell segmentation
  • Workflow options
  • Example usage
  • Input Files
  • Outputs
  • Parameters
  • Guide: Multiplexed consensus cell segmentation (MCCS)
  • Appendix: TRACERx nuclear IMC segmentation dataset

TYPEx

  • Deep cell phenotyping
  • Usage
  • Input Files
  • Input Parameters
  • Outputs
  • Troubleshooting

Spatial-PHLEX

  • Spatial TME analysis
  • Workflow options
  • Example usage
  • Input Files
  • Outputs
  • Parameters
  • Troubleshooting

Guides

  • Multiplexed consensus cell segmentation (MCCS)
TRACERx PHLEX
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