TRACERx PHLEX
0.1.0

Getting started

  • Quick start
  • Tutorial
  • Contact

Deep-imcyto

  • Nuclear and cell segmentation
  • Workflow options
  • Example usage
  • Input Files
  • Outputs
  • Parameters
  • Guide: Multiplexed consensus cell segmentation (MCCS)
  • Troubleshooting
  • Appendix: TRACERx nuclear IMC segmentation dataset

TYPEx

  • Deep cell phenotyping
  • Usage
  • Input Files
  • Input Parameters
  • Outputs
  • Guide
  • Troubleshooting

Spatial-PHLEX

  • Spatial TME analysis
  • Workflow options
  • Example usage
  • Input Files
  • Outputs
  • Parameters
  • Troubleshooting

Guides

  • Download a detailed step-by-step guide
  • Data Repository
  • Multiplexed consensus cell segmentation (MCCS)
TRACERx PHLEX
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